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BaseInfo

ncRNA ID novel_bra_miR861
Species Brassica rapa
Class miRNA
Genome position ChrA6:22777054-22777098 [-]
Reference genome Brapa_1.0
Source SRR1485266;SRR1485270;SRR1485274
Length 21
Mature sequence(if miRNA) 25 - CUUGGGUAAACCCUGAACCCU - 45
Stem-loop(if miRNA) --          CC        
  CUUGGGUAAA  CUGAACCCU
  ||||||||||  ||||||||U
  GAACCCAUUU  GAUUUGGGG
GG          AA        
Stem-loop sequence CUUGGGUAAACCCUGAACCCUUGGGGUUUAGAAUUUACCCAAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009141754.1
ncRNA:21   UCCCAAGUCCCAAAUGGGUUC   1
  |*|||||=|||||||*|||||
targets:858   ACGGUUCGGGGUUUAACCAAG   878

2.5 PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At5g40400 (LOC103863988), mRNA pentatricopeptide repeat-containing protein At5g40400(LOC103863988) coding protein psRNATarget