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BaseInfo

ncRNA ID	novel_bra_miR856
Species	Brassica rapa
Class	miRNA
Genome position	ChrA3:8786509-8786640 [-]
Reference genome	Brapa_1.0
Source	SRR1485266
Length	21
Mature sequence(if miRNA)	1 - AUAGAGGAAAAAAUAGAGUUC - 21
Stem-loop(if miRNA)	--ACA    AAA          U  C  U                            U    UUGC      CUAU   UUUCUCUAUA UU AC CUAAAAUAGAGUAACUCUAUUAUAGAGU GACU    U      ||||   |||||||||| || || |||||||||||||||||||||||||||| ||||      GAUA   AAGGAGAUAU AA UG GAUUUUAUCUCAUUGAGAUAAUAUCUCA UUGG    U CUUGA    AAA          U  A  U                            C    UAAC
Stem-loop sequence	ACACUAUAAAUUUCUCUAUAUUUCACUCUAAAAUAGAGUAACUCUAUUAUAGAGUUGACUUUGCUUCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUUUUAGUGUAAAUUAUAGAGGAAAAAAUAGAGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009131654.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   |*||||||||||||||||||| targets:1309   GCACUCUAUUUUUUCCUCUAU   1329 Target Full Sequence	0.0	PREDICTED: Brassica rapa non-functional pseudokinase ZED1 (LOC103854690), transcript variant X1, mRNA	non-functional pseudokinase ZED1(LOC103854690)	coding protein	psRNATarget
XM_009131655.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   |*||||||||||||||||||| targets:1240   GCACUCUAUUUUUUCCUCUAU   1260 Target Full Sequence	0.0	PREDICTED: Brassica rapa non-functional pseudokinase ZED1 (LOC103854690), transcript variant X2, mRNA	non-functional pseudokinase ZED1(LOC103854690)	coding protein	psRNATarget
XM_009139789.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   *|||||*|||||||||||||* targets:1173   AAACUCCAUUUUUUCCUCUAA   1193 Target Full Sequence	2.0	PREDICTED: Brassica rapa WRKY transcription factor 18-like (WRKY1), transcript variant X1, mRNA	WRKY transcription factor 18-like(WRKY1)	coding protein	psRNATarget
AY836002.1	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   *|||||*|||||||||||||* targets:930   AAACUCCAUUUUUUCCUCUAA   950 Target Full Sequence	2.0	Brassica rapa subsp. chinensis WRKY DNA-binding protein 1 (WRKY1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009138340.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   |*|||||=|||||||||||*| targets:23   GCACUCUGUUUUUUCCUCUUU   43 Target Full Sequence	2.5	PREDICTED: Brassica rapa SPX domain-containing membrane protein At4g22990 (LOC103860690), transcript variant X1, mRNA	SPX domain-containing membrane protein At4g22990(LOC103860690)	coding protein	psRNATarget
XM_009138358.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   |*|||||=|||||||||||*| targets:24   GCACUCUGUUUUUUCCUCUUU   44 Target Full Sequence	2.5	PREDICTED: Brassica rapa SPX domain-containing membrane protein At4g22990 (LOC103860690), transcript variant X3, mRNA	SPX domain-containing membrane protein At4g22990(LOC103860690)	coding protein	psRNATarget
XM_009138349.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   |*|||||=|||||||||||*| targets:23   GCACUCUGUUUUUUCCUCUUU   43 Target Full Sequence	2.5	PREDICTED: Brassica rapa SPX domain-containing membrane protein At4g22990 (LOC103860690), transcript variant X2, mRNA	SPX domain-containing membrane protein At4g22990(LOC103860690)	coding protein	psRNATarget
XM_009110974.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   *|||||*=||||||||||||* targets:2303   AAACUCAGUUUUUUCCUCUAA   2323 Target Full Sequence	3.0	PREDICTED: Brassica rapa E3 ubiquitin protein ligase RIN2 (LOC103834881), transcript variant X1, mRNA	E3 ubiquitin protein ligase RIN2(LOC103834881)	coding protein	psRNATarget
XM_009110975.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   *|||||*=||||||||||||* targets:2269   AAACUCAGUUUUUUCCUCUAA   2289 Target Full Sequence	3.0	PREDICTED: Brassica rapa E3 ubiquitin protein ligase RIN2 (LOC103834881), transcript variant X2, mRNA	E3 ubiquitin protein ligase RIN2(LOC103834881)	coding protein	psRNATarget
XM_009105729.2	ncRNA:21   CUUGAGAUAAAAAAGGAGAUA   1   *|||*=|*||||||||||||| targets:1703   AAACCUUUUUUUUUCCUCUAU   1723 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein ESKIMO 1 (LOC103830030), mRNA	protein ESKIMO 1(LOC103830030)	coding protein	psRNATarget