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BaseInfo

ncRNA ID novel_bra_miR852
Species Brassica rapa
Class miRNA
Genome position ChrA10:10823426-10823481 [-]
Reference genome Brapa_1.0
Source SRR1485265
Length 24
Mature sequence(if miRNA) 33 - AUAUUGUUGAAACAGAAGGGCACC - 56
Stem-loop(if miRNA) --                   G A   CA
  AUAUUGUUGAAACAGAAGG C CCU  A
  ||||||||||||||||||| | |||
  UAUGAUAAUUUUGUCUUCU G GGA  A
GU                   - -   AA
Stem-loop sequence AUAUUGUUGAAACAGAAGGGCACCUCAAAAAAGGGUCUUCUGUUUUAAUAGUAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018659363.1
ncRNA:24   CCACGGGAAGACAAAGUUGUUAUA   1
  |||||||||=||||||||||=|||
targets:2163   GGUGCCCUUUUGUUUCAACAGUAU   2186

2.5 PREDICTED: Brassica rapa nudix hydrolase 22, chloroplastic (LOC103867497), transcript variant X5, mRNA NA coding protein psRNATarget