ncRNA ID | novel_bra_miR847 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:1881978-1882159 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485265 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UACGUAGCGACCGAGCUCGAGCCU - 24 |
Stem-loop(if miRNA) |
--                UC  GCCUA   -     CUC    G         GUCC U   --        A           C    C UC   UACGUAGCGACCGAGC  GA     GCU GGUCG   UGUA CGACCGAGC    G CUC  GCUCGGUC CUGCGUAGCGA CGAG G  C   ||||||||||||||||  ||     ||| |||||   |||| |||||||||    | |||  |||||||| ||||||||||| |||| |  A   AUGCAUCGCUGGCUCG  CU     CGA CCAGC   GCAU GCUGGCUCG    C GAG  CGAGCCAG GAUGCAUCGCU GCUC C  U CG                CC  GCCUG   A     AAU    A         -AAC -   CU        C           A    A CC |
Stem-loop sequence | UACGUAGCGACCGAGCUCGAGCCUAGCUGGUCGCUCUGUAGCGACCGAGCGUCCGUCUCGCUCGGUCACUGCGUAGCGACCGAGCGUCCAUCCCACUCGAUCGCUACGUAGCGACCGAGCUCGAGCCAAGCUCGGUCGAUACGUAACGACCAAGCGUCCGUCCCGCUCGGUCGCUACGUAGC |