| ncRNA ID | novel_bra_miR833 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA9:9138048-9138245 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485263 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - AAGAACCCCCAUUAAUCAUGCUCU - 24 |
| Stem-loop(if miRNA) |
-- G G UGAUU U C U C AAC CU AGCAUGAUUAAUGGGGG UUCUUA GGUG GGUUCUUAGCGGAA AUAAGAAU C UCUCUUAA UUUUAACUAAAAA UAAGAACCGGCU U ||||||||||||||||| |||||| |||| |||||||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||| A UCGUACUAAUUACCCCC AAGAAU CUAC CCAAGAAUCGCUUU UAUUCUUA G AGAGAAUU AAAAUUGAUUUUU AUUCUUGGCCGA A UC - A ----U U A C A CCA UA |
| Stem-loop sequence | AGCAUGAUUAAUGGGGGGUUCUUAGGGUGUGAUUGGUUCUUAGCGGAAUAUAAGAAUCCUUCUCUUAACUUUUAACUAAAAAAACUAAGAACCGGCUCUUAAAUAGCCGGUUCUUAACCUUUUUAGUUAAAAAUUAAGAGACGAAUUCUUAUUUUUCGCUAAGAACCUCAUCAUAAGAACCCCCAUUAAUCAUGCUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009141576.2 |
|
1.5 | PREDICTED: Brassica rapa putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (LOC103863821), transcript variant X2, mRNA | putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase(LOC103863821) | coding protein | psRNATarget | |||||||||
| XM_009141575.1 |
|
1.5 | PREDICTED: Brassica rapa putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (LOC103863821), transcript variant X1, mRNA | putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase(LOC103863821) | coding protein | psRNATarget |