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BaseInfo

ncRNA ID novel_bra_miR814
Species Brassica rapa
Class miRNA
Genome position ChrA8:8169399-8169471 [+]
Reference genome Brapa_1.0
Source SRR1485262
Length 24
Mature sequence(if miRNA) 50 - UUUUAUAACUGUUAAAACUGCACC - 73
Stem-loop(if miRNA) --C     --         C      C C  C     
   GCAGU  UAACAGUUA AAAAAU U UA AUAUAA
   |||||  ||||||||| |||||| | || |||||U
   CGUCA  AUUGUCAAU UUUUUA A AU UAUAUA
CCA     AA         A      C U  C     
Stem-loop sequence CGCAGUUAACAGUUACAAAAAUCUCUACAUAUAAUAUAUAUCUAUACAUUUUUAUAACUGUUAAAACUGCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018657223.1
ncRNA:24   CCACGUCAAAAUUGUCAAUAUUUU   1
  **|*|||*||*|||||||||||||
targets:1960   UUUACAGAUUGAACAGUUAUAAAA   1983

2.0 PREDICTED: Brassica rapa spermidine coumaroyl-CoA acyltransferase-like (LOC108871125), mRNA NA coding protein psRNATarget