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BaseInfo

ncRNA ID novel_bra_miR807
Species Brassica rapa
Class miRNA
Genome position ChrA2:12772166-12772242 [-]
Reference genome Brapa_1.0
Source SRR1125021
Length 24
Mature sequence(if miRNA) 1 - AAGAACCGUCUCUUAAAUAAAAGA - 24
Stem-loop(if miRNA) --UC     A                        AAAU
    UUAUU AAGAGACGGUUCUUAGUUUUUCUU    U
    ||||| ||||||||||||||||||||||||    U
    AAUAA UUCUCUGCCAAGAAUCAAAAAGAA    U
AGAA     A                        GCAA
Stem-loop sequence UCUUAUUAAAGAGACGGUUCUUAGUUUUUCUUAAAUUUUAACGAAGAAAAACUAAGAACCGUCUCUUAAAUAAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009151904.2
ncRNA:24   AGAA-------AAUAAAUUCUCUGCCAAGAA   1
  ||||-------||||||||||||||*|||||
targets:1270   UCUUAUAUAUCUUAUUUAAGAGACGUUUCUU   1300

1.5 PREDICTED: Brassica rapa UPF0160 protein (LOC103873492), mRNA UPF0160 protein(LOC103873492) coding protein psRNATarget