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BaseInfo

ncRNA ID novel_bra_miR805
Species Brassica rapa
Class miRNA
Genome position ChrA6:14379505-14379602 [+]
Reference genome Brapa_1.0
Source SRR1485262
Length 21
Mature sequence(if miRNA) 78 - AUUUAGAAUUUAUGAUUUAUC - 98
Stem-loop(if miRNA) --                        -               UC  AAA
  UAAAUCAUAAAUUCUAAAUCAAAA CACUAAACACUAAAA  CU   C
  |||||||||||||||||||||||| |||||||||||||||  ||   U
  AUUUAGUAUUUAAGAUUUAGUUUU GUGAUUUGUGAUUUU  GA   C
CU                        U               GU  AUU
Stem-loop sequence UAAAUCAUAAAUUCUAAAUCAAAACACUAAACACUAAAAUCCUAAACUCUUAAGUGUUUUAGUGUUUAGUGUUUUUGAUUUAGAAUUUAUGAUUUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009151714.2
ncRNA:21   CUAUUUAGUAUUUAAGAUUUA   1
  **|||||=*||||||||||||
targets:138   UCUAAAUUCUAAAUUCUAAAU   158

2.5 PREDICTED: Brassica rapa serine/threonine-protein phosphatase PP1 isozyme 2 (LOC103873291), mRNA serine/threonine-protein phosphatase PP1 isozyme 2(LOC103873291) coding protein psRNATarget
XM_009114213.2
ncRNA:21   CUAUUUAGUAUUUAAGAUUUA   1
  *=|||||*|||||*|||||||
targets:641   UGUAAAUGAUAAAGUCUAAAU   661

2.5 PREDICTED: Brassica rapa chaperone protein dnaJ 11, chloroplastic-like (LOC103837831), mRNA chaperone protein dnaJ 11, chloroplastic-like(LOC103837831) coding protein psRNATarget