ncRNA ID | novel_bra_miR805 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA6:14379505-14379602 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485262 |
Length | 21 |
Mature sequence(if miRNA) | 78 - AUUUAGAAUUUAUGAUUUAUC - 98 |
Stem-loop(if miRNA) |
--                        -               UC  AAA   UAAAUCAUAAAUUCUAAAUCAAAA CACUAAACACUAAAA  CU   C   |||||||||||||||||||||||| |||||||||||||||  ||   U   AUUUAGUAUUUAAGAUUUAGUUUU GUGAUUUGUGAUUUU  GA   C CU                        U               GU  AUU |
Stem-loop sequence | UAAAUCAUAAAUUCUAAAUCAAAACACUAAACACUAAAAUCCUAAACUCUUAAGUGUUUUAGUGUUUAGUGUUUUUGAUUUAGAAUUUAUGAUUUAUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009151714.2 |
|
2.5 | PREDICTED: Brassica rapa serine/threonine-protein phosphatase PP1 isozyme 2 (LOC103873291), mRNA | serine/threonine-protein phosphatase PP1 isozyme 2(LOC103873291) | coding protein | psRNATarget | |||||||||
XM_009114213.2 |
|
2.5 | PREDICTED: Brassica rapa chaperone protein dnaJ 11, chloroplastic-like (LOC103837831), mRNA | chaperone protein dnaJ 11, chloroplastic-like(LOC103837831) | coding protein | psRNATarget |