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BaseInfo

ncRNA ID novel_bra_miR797
Species Brassica rapa
Class miRNA
Genome position ChrA9:4446461-4446654 [+]
Reference genome Brapa_1.0
Source SRR1485260
Length 22
Mature sequence(if miRNA) 173 - UCAGAACCAAACACAGAACAAG - 194
Stem-loop(if miRNA) --       -     A             AG     C          AU      C                 U   AA       --       UUG
  UGUUCUG GUUUG UUUUGAACAGCUU  UGUUG UCUGUAAUGG  GCAUAA CAGUAGAUAUGUCAGGA AUU  AAGGAAC  CGUUAUU   C
  ||||||| ||||| |||||||||||||  ||||| ||||||||||  |||||| ||||||||||||||||| |||  |||||||  |||||||   C
  ACAAGAC CAAAC AAGACUUGUCGAA  ACGAC AGACAUUACC  CGUAUU GUCAUCUAUACAGUCUU UAA  UUCCUUG  GCGAUAG   U
GA       A     C             CA     A          AC      C                 C   GC       UA       UGC
Stem-loop sequence UGUUCUGGUUUGAUUUUGAACAGCUUAGUGUUGCUCUGUAAUGGAUGCAUAACCAGUAGAUAUGUCAGGAUAUUAAAAGGAACCGUUAUUUUGCCUCGUGAUAGCGAUGUUCCUUCGAAUCUUCUGACAUAUCUACUGCUUAUGCCACCAUUACAGAACAGCAACAAGCUGUUCAGAACCAAACACAGAACAAG