ncRNA ID | novel_bra_miR797 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:4446461-4446654 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485260 |
Length | 22 |
Mature sequence(if miRNA) | 173 - UCAGAACCAAACACAGAACAAG - 194 |
Stem-loop(if miRNA) |
--       -     A             AG     C          AU      C                 U   AA       --       UUG   UGUUCUG GUUUG UUUUGAACAGCUU  UGUUG UCUGUAAUGG  GCAUAA CAGUAGAUAUGUCAGGA AUU  AAGGAAC  CGUUAUU   C   ||||||| ||||| |||||||||||||  ||||| ||||||||||  |||||| ||||||||||||||||| |||  |||||||  |||||||   C   ACAAGAC CAAAC AAGACUUGUCGAA  ACGAC AGACAUUACC  CGUAUU GUCAUCUAUACAGUCUU UAA  UUCCUUG  GCGAUAG   U GA       A     C             CA     A          AC      C                 C   GC       UA       UGC |
Stem-loop sequence | UGUUCUGGUUUGAUUUUGAACAGCUUAGUGUUGCUCUGUAAUGGAUGCAUAACCAGUAGAUAUGUCAGGAUAUUAAAAGGAACCGUUAUUUUGCCUCGUGAUAGCGAUGUUCCUUCGAAUCUUCUGACAUAUCUACUGCUUAUGCCACCAUUACAGAACAGCAACAAGCUGUUCAGAACCAAACACAGAACAAG |