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BaseInfo

ncRNA ID	novel_bra_miR790
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:8681962-8682077 [-]
Reference genome	Brapa_1.0
Source	SRR1485260
Length	24
Mature sequence(if miRNA)	93 - ACCCUUGGGUAAACCCUGAACCCU - 116
Stem-loop(if miRNA)	--                                      A  G  AAUCAAAAAUAU   ACCCUUGGGUAAACCCUGAACCCUUGGAUAAAUCAUAA CU UA            U   |||||||||||||||||||||||||||||||||||||| || ||   UGGGAACCUAUUUGGGACUUGGGAACCUAUUUAGUAUU GA AU            U UU                                      A  G  CUCAAAUUAAAA
Stem-loop sequence	ACCCUUGGGUAAACCCUGAACCCUUGGAUAAAUCAUAAACUGUAAAUCAAAAAUAUUUAAAAUUAAACUCUAGAGAUUAUGAUUUAUCCAAGGGUUCAGGGUUUAUCCAAGGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY335489.1	ncRNA:24   UCCCAAGUCCCAAAUGGGUUCCCA   1   =*|**|||*|||||||=||||||| targets:963   GAGCCUCAUGGUUUACUCAAGGGU   986 Target Full Sequence	2.5	Brassica rapa subsp. pekinensis ThiJ-like protein (TJLP1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009148050.2	ncRNA:24   UCCCAAGUCCCAAAUGGGUUCCCA   1   =*|**|||*|||||||=||||||| targets:1053   GAGCCUCAUGGUUUACUCAAGGGU   1076 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein DJ-1 homolog A (TJLP1), mRNA	protein DJ-1 homolog A(TJLP1)	coding protein	psRNATarget
XM_009137168.2	ncRNA:24   UCCCAAGUCCCAAAUGGGUUCCCA   1   =*|**|||*|||||||=||||||| targets:1060   GAGCCUCAUGGUUUACUCAAGGGU   1083 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein DJ-1 homolog A-like (LOC103859601), mRNA	protein DJ-1 homolog A-like(LOC103859601)	coding protein	psRNATarget