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BaseInfo

ncRNA ID	novel_bra_miR788
Species	Brassica rapa
Class	miRNA
Genome position	ChrA5:779976-780172 [-]
Reference genome	Brapa_1.0
Source	SRR2912894
Length	21
Mature sequence(if miRNA)	1 - UUUGGAUUGAAGGGAGCUCCU - 21
Stem-loop(if miRNA)	--            U  A            CA   UUUA    A   -----------    -C    A      UU UU    G UU    -CAUU        GA   GAGCUCCCUUCG UC AAACGAGGAGGA  AGA    AGGA AUA           AAAG  AGAA AUCUAA  G  CAUG A  CCCU     AAGUGCUU  A   |||||||||||| || ||||||||||||  |||    |||| |||           ||||  |||| ||||||  |  |||| |  ||||     ||||||||  U   CUCGAGGGAAGU AG UUUGCUUCUCUU  UCU    UCCU UAU           UUUC  UCUU UAGAUU  C  GUAC U  GGGG     UUCACGAG  A UC            U  G            -C   ----    A   AUAUGCAUCUC    UC    C      CU CG    G UU    UCAUU        UA
Stem-loop sequence	GAGCUCCCUUCGUUCAAAACGAGGAGGACAAGAUUUAAGGAAAUAAAAGCAGAAAAUCUAAUUGUUCAUGGAUUCCCUCAUUAAGUGCUUGAAUAAUGAGCACUUUUACUGGGGUUUGCAUGGCCUCUUAGAUCUUCUCUCUUUCUCUACGUAUAUAUAUCCUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128793.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   |*|||||||||||||*||||| targets:1109   AAGAGCUCCCUUCAAACCAAA   1129 Target Full Sequence	1.5	PREDICTED: Brassica rapa transcription factor MYB28-like (LOC103851911), mRNA	transcription factor MYB28-like(LOC103851911)	coding protein	psRNATarget
XM_009134603.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   **|||||=||||||=|||||| targets:1145   UAGAGCUUCCUUCAGUCCAAA   1165 Target Full Sequence	2.5	PREDICTED: Brassica rapa myb-related protein 306 (LOC103857427), mRNA	myb-related protein 306(LOC103857427)	coding protein	psRNATarget
XM_018653318.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:804   UGGAGCUCCCUUCAUUCCAAU   824 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104 (LOC103829641), mRNA	NA	coding protein	psRNATarget
XM_009122890.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1110   UGGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_009122888.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1110   UGGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_018655732.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1118   UGGAGCUCCCUUCAUUCCAAU   1138 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009148477.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1138   UGGAGCUCCCUUCAUUCCAAU   1158 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X3, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009148476.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1137   UGGAGCUCCCUUCAUUCCAAU   1157 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X1, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009135672.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1319   UGGAGCUCCCUUCAUUCCAAU   1339 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X1, mRNA	transcription factor MYB104-like(LOC103858339)	coding protein	psRNATarget
XM_018657195.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1553   UGGAGCUCCCUUCAUUCCAAU   1573 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659244.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*|||||* targets:1578   UGGAGCUCCCUUCAUUCCAAU   1598 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009121778.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   |*|||=|||||||||*||||| targets:1160   AAGAGUUCCCUUCAAACCAAA   1180 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26-like (LOC103844949), mRNA	transcription factor MYB26-like(LOC103844949)	coding protein	psRNATarget
XM_009151997.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   *|*|||||||*|||||||||| targets:508   CGAAGCUCCCCUCAAUCCAAA   528 Target Full Sequence	2.5	PREDICTED: Brassica rapa actin-12 (LOC103873596), mRNA	actin-12(LOC103873596)	coding protein	psRNATarget
XM_009134163.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1   |*||*||||||||||*||||| targets:1139   AAGACCUCCCUUCAAACCAAA   1159 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26 (LOC103857012), mRNA	transcription factor MYB26(LOC103857012)	coding protein	psRNATarget