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BaseInfo

ncRNA ID	novel_bra_miR779
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:16019262-16019351 [+]
Reference genome	Brapa_1.0
Source	SRR2912894
Length	23
Mature sequence(if miRNA)	1 - AUCAUGCCUGGCUCCCUGUAUGC - 23
Stem-loop(if miRNA)	--A      C       C          A  UG GUA        G    UCAUGC UGGCUCC UGUAUGCCAC AG  G   UCGAUUUU U    |||||| ||||||| |||||||||| ||  |   |||||||| U    AGUACG ACCGAGG GCAUGCGGUG UC  C   GGUUAAAA A ACC      A       A          G  GU ---        A
Stem-loop sequence	AUCAUGCCUGGCUCCCUGUAUGCCACAAGUGGGUAUCGAUUUUGUUAAAAAAUUGGCUGCUGGUGGCGUACGAGGAGCCAAGCAUGACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JN979477.1	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   |=*|||||||||||||||||*|| targets:1298   GUUUACAGGGAGCCAGGCAUAAU   1320 Target Full Sequence	1.5	Brassica rapa subsp. pekinensis auxin response factor 16-1 (ARF16-1) mRNA, complete cds	NA	coding protein	psRNATarget
JN979478.1	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   |=*|||||||||||||||||*|| targets:1442   GUUUACAGGGAGCCAGGCAUAAU   1464 Target Full Sequence	1.5	Brassica rapa subsp. pekinensis auxin response factor 16-2 (ARF16-2) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009129881.2	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   |=*|||||||||||||||||*|| targets:1537   GUUUACAGGGAGCCAGGCAUAAU   1559 Target Full Sequence	1.5	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-1), mRNA	auxin response factor 16(ARF16-1)	coding protein	psRNATarget
XM_009139640.2	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   |=*|||||||||||||||||*|| targets:1525   GUUUACAGGGAGCCAGGCAUAAU   1547 Target Full Sequence	1.5	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-2), mRNA	auxin response factor 16(ARF16-2)	coding protein	psRNATarget
JN979479.1	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   ||||=|||||||||||||||*|| targets:1241   GCAUGCAGGGAGCCAGGCAUUAU   1263 Target Full Sequence	2.5	Brassica rapa subsp. pekinensis auxin response factor 17-1 (ARF17-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009106351.2	ncRNA:23   CGUAUGUCCCUCGGUCCGUACUA   1   ||||=|||||||||||||||*|| targets:1350   GCAUGCAGGGAGCCAGGCAUUAU   1372 Target Full Sequence	2.5	PREDICTED: Brassica rapa auxin response factor 17 (ARF17-1), mRNA	auxin response factor 17(ARF17-1)	coding protein	psRNATarget