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BaseInfo

ncRNA ID	novel_bra_miR778
Species	Brassica rapa
Class	miRNA
Genome position	ChrA8:9673105-9673178 [-]
Reference genome	Brapa_1.0
Source	SRR2912894;SRR1485271
Length	22
Mature sequence(if miRNA)	53 - UCUGCUAUCAACUUGUAGAGUC - 74
Stem-loop(if miRNA)	--   G    C                A     - UUG   UCU CUAU AACUUGUAGAGUCUUU UGUAU C   A   ||| |||| |||||||||||||||| ||||| |   AGA GAUA UUGAACGUCUCAGAAA AUAUA G   U GA   A    -                G     U UUA
Stem-loop sequence	UCUGCUAUCAACUUGUAGAGUCUUUAUGUAUCUUGAUAUUGUAUAUAGAAAGACUCUGCAAGUUAUAGAAGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018657155.1	ncRNA:22   CUGAGAUGUUCAACUAUCGUCU   1   ||||||||=||*|||||||||| targets:458   GACUCUACGAGCUGAUAGCAGA   479 Target Full Sequence	2.5	PREDICTED: Brassica rapa death-associated protein kinase dapk-1-like (LOC103861153), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009138859.2	ncRNA:22   CUGAGAUGUUCAACUAUCGUCU   1   ||||||||=||*|||||||||| targets:694   GACUCUACGAGCUGAUAGCAGA   715 Target Full Sequence	2.5	PREDICTED: Brassica rapa death-associated protein kinase dapk-1-like (LOC103861153), transcript variant X1, mRNA	death-associated protein kinase dapk-1-like(LOC103861153)	coding protein	psRNATarget
XM_018657154.1	ncRNA:22   CUGAGAUGUUCAACUAUCGUCU   1   ||||||||=||*|||||||||| targets:706   GACUCUACGAGCUGAUAGCAGA   727 Target Full Sequence	2.5	PREDICTED: Brassica rapa death-associated protein kinase dapk-1-like (LOC103861153), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018658319.1	ncRNA:22   CUGAGAUGUUCAACUAUCGUCU   1   ||||=||==||||||||||||| targets:207   GACUUUAUGAGUUGAUAGCAGA   228 Target Full Sequence	3.0	PREDICTED: Brassica rapa serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like (LOC103863857), mRNA	NA	coding protein	psRNATarget