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BaseInfo

ncRNA ID	novel_bra_miR776
Species	Brassica rapa
Class	miRNA
Genome position	ChrA8:11459684-11459820 [+]
Reference genome	Brapa_1.0
Source	SRR2912894
Length	21
Mature sequence(if miRNA)	117 - AGGGUUUAGGGUUUAGGGUAA - 137
Stem-loop(if miRNA)	--               A    GGGUUUUACG  UG  --        UCAAAAAAAAUUAUGGUUUUAGGGU   ACCCUAAACCCUAAA UUUA          GU  AG  UUUGAAUU                         U   ||||||||||||||| ||||          ||  ||  ||||||||                         U   UGGGAUUUGGGAUUU GGAU          UA  AG  UUUAAGUU                         A AA               G    ------AUAA  --  GC        UGAGAUUUGGGAUUUUGUAGUUUAG
Stem-loop sequence	ACCCUAAACCCUAAAAUUUAGGGUUUUACGGUUGAGUUUGAAUUUCAAAAAAAAUUAUGGUUUUAGGGUUUAGAUUUGAUGUUUUAGGGUUUAGAGUUUGAAUUUCGGAAUAAUAUAGGGUUUAGGGUUUAGGGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018659587.1	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|=||||||||||||||||| targets:112   GGAUCCUAAACCCUAAACCCU   132 Target Full Sequence	1.0	PREDICTED: Brassica rapa transcription factor MYB35 (LOC108872206), mRNA	NA	coding protein	psRNATarget
XM_009115975.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|||||||||||||||||=| targets:116   AAACCCUAAACCCUAAACCUU   136 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (LOC103839464), mRNA	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial(LOC103839464)	coding protein	psRNATarget
XM_009136013.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   ***|||||||||||||||||* targets:277   CCUCCCUAAACCCUAAACCCC   297 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103858624 (LOC103858624), mRNA	uncharacterized LOC103858624(LOC103858624)	coding protein	psRNATarget
XM_009122727.1	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|||=*|||||||||||||| targets:113   AGACCUAAAACCCUAAACCCU   133 Target Full Sequence	2.0	PREDICTED: Brassica rapa transcription factor mef2A (LOC103845836), transcript variant X2, mRNA	transcription factor mef2A(LOC103845836)	coding protein	psRNATarget
XM_009122728.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|||=*|||||||||||||| targets:125   AGACCUAAAACCCUAAACCCU   145 Target Full Sequence	2.0	PREDICTED: Brassica rapa transcription factor mef2A (LOC103845836), transcript variant X3, mRNA	transcription factor mef2A(LOC103845836)	coding protein	psRNATarget
XM_009122726.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|||=*|||||||||||||| targets:125   AGACCUAAAACCCUAAACCCU   145 Target Full Sequence	2.0	PREDICTED: Brassica rapa transcription factor mef2A (LOC103845836), transcript variant X1, mRNA	transcription factor mef2A(LOC103845836)	coding protein	psRNATarget
XM_009122990.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|||||||||||*||||||* targets:160   GGACCCUAAACCCCAAACCCG   180 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At2g15980 (LOC103846071), mRNA	pentatricopeptide repeat-containing protein At2g15980(LOC103846071)	coding protein	psRNATarget
XM_009128006.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   |*=*||||||||||||||||* targets:210   UGGACCUAAACCCUAAACCCC   230 Target Full Sequence	3.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At5g18475 (LOC103851174), mRNA	pentatricopeptide repeat-containing protein At5g18475(LOC103851174)	coding protein	psRNATarget
XM_009145158.2	ncRNA:21   AAUGGGAUUUGGGAUUUGGGA   1   **|=||*|||||||||||||* targets:688   GAAUCCAAAACCCUAAACCCG   708 Target Full Sequence	3.0	PREDICTED: Brassica rapa trihelix transcription factor GT-3b-like (LOC103867126), mRNA	trihelix transcription factor GT-3b-like(LOC103867126)	coding protein	psRNATarget