ncRNA ID | novel_bra_miR769 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA4:13492761-13492920 [-] |
Reference genome | Brapa_1.0 |
Source | SRR2912893 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGUUUCUUUUGGAGAUGCUCUAAG - 24 |
Stem-loop(if miRNA) |
--                                                                             A   UAGAGCAUCUCCAAAAGAAACUCUAUAACUCCAAAUAUAGAGUUUUUUGCUCUCCAAAAAGGAACUUCAAAACUUCA A   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   AUCUCGUAGAGGUUUUCUUUGAGAUAUUGAGGUUUAUAUCUCAAAAAACGAGAGGUUUUUCCUUGAAGUUUUGAAGU U GA                                                                             U |
Stem-loop sequence | UAGAGCAUCUCCAAAAGAAACUCUAUAACUCCAAAUAUAGAGUUUUUUGCUCUCCAAAAAGGAACUUCAAAACUUCAAAUUUGAAGUUUUGAAGUUCCUUUUUGGAGAGCAAAAAACUCUAUAUUUGGAGUUAUAGAGUUUCUUUUGGAGAUGCUCUAAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009144332.2 |
|
2.5 | PREDICTED: Brassica rapa pectin acetylesterase 3 (LOC103866417), mRNA | pectin acetylesterase 3(LOC103866417) | coding protein | psRNATarget |