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BaseInfo

ncRNA ID ath-miRf10788-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - ACUCGACCUCAUCAUUCUACCUAGA - NA
Stem-loop(if miRNA)    C AC         U    -AU  UACCU           AUCGCCAUCACACCAC    CUGCAUACUCGAUCACAAGCUUCAGAGCCUUCUUCAUUCCG
AGA C  UACUCGACC CAUC   UC     AGAGGUCGAGU                UCGA                                         C
||| |  ||||||||| ||||   ||     |||||||||||                ||||
UCU G  AUGAGCUGG GUAG   AG     UCUCCAGCUCA                UUGA                                         A
   U AC         -    ACC  CUCAC           ------------CUUA    CCUCAGAAGAAAAGAAGGAACACGAGCUCACAGACCAAUUC
Stem-loop sequence AGACCACUACUCGACCUCAUCAUUCUACCUAGAGGUCGAGUAUCGCCAUCACACCACUCGACUGCAUACUCGAUCACAAGCUUCAGAGCCUUCUUCAUUCCGCACUUAACCAGACACUCGAGCACAAGGAAGAAAAGAAGACUCCAGUUAUUCACUCGACCUCUCACUCGACCAGAUGGGUCGAGUACAGUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:25   AGAUCCAUCUUACUACUCCAGCUCA   1
  |||=||||||=|||*||||||||||
targets:1815   UCUGGGUAGAGUGAGGAGGUCGAGU   1839

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
NM_126651.1
ncRNA:25   AGAUCCAUCUUACUACUCCAGCUCA   1
  ||*=||||||=||||||||||*|||
targets:789   UCCGGGUAGAGUGAUGAGGUCAAGU   813

2.5 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT2G06570) coding protein psRNATarget