ncRNA ID | ath-miRf10788-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 25 |
Mature sequence(if miRNA) | NA - ACUCGACCUCAUCAUUCUACCUAGA - NA |
Stem-loop(if miRNA) |
   C AC         U    -AU  UACCU           AUCGCCAUCACACCAC    CUGCAUACUCGAUCACAAGCUUCAGAGCCUUCUUCAUUCCG AGA C  UACUCGACC CAUC   UC     AGAGGUCGAGU                UCGA                                         C ||| |  ||||||||| ||||   ||     |||||||||||                |||| UCU G  AUGAGCUGG GUAG   AG     UCUCCAGCUCA                UUGA                                         A    U AC         -    ACC  CUCAC           ------------CUUA    CCUCAGAAGAAAAGAAGGAACACGAGCUCACAGACCAAUUC |
Stem-loop sequence | AGACCACUACUCGACCUCAUCAUUCUACCUAGAGGUCGAGUAUCGCCAUCACACCACUCGACUGCAUACUCGAUCACAAGCUUCAGAGCCUUCUUCAUUCCGCACUUAACCAGACACUCGAGCACAAGGAAGAAAAGAAGACUCCAGUUAUUCACUCGACCUCUCACUCGACCAGAUGGGUCGAGUACAGUUCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EF183005.1 |
|
2.5 | Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
NM_126651.1 |
|
2.5 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT2G06570) | coding protein | psRNATarget |