Search result

BaseInfo

ncRNA ID novel_bra_miR759
Species Brassica rapa
Class miRNA
Genome position ChrA8:9319019-9319100 [+]
Reference genome Brapa_1.0
Source SRR2912893;SRR2912894
Length 21
Mature sequence(if miRNA) 62 - AUGGUAACCAAUGUAUUUGAA - 82
Stem-loop(if miRNA) --                                      G
  CAAAUACAUUGGUUACCAUAUAUAUCCACUUUUUUUUU A
  ||||||||||||||||||||||||||||||||||||||
  GUUUAUGUAACCAAUGGUAUAUAUAGGUGAAAGAAAAA C
AA                                      C
Stem-loop sequence CAAAUACAUUGGUUACCAUAUAUAUCCACUUUUUUUUUGACCAAAAAGAAAGUGGAUAUAUAUGGUAACCAAUGUAUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009136318.2
ncRNA:21   AAGUUUAUGUAACCAAUGGUA   1
  ***|||||=||||||||||||
targets:702   AAAAAAUAUAUUGGUUACCAU   722

2.5 PREDICTED: Brassica rapa E3 ubiquitin-protein ligase RHA1B (LOC103858876), mRNA E3 ubiquitin-protein ligase RHA1B(LOC103858876) coding protein psRNATarget
XM_009152068.1
ncRNA:21   AAGUUUAUGUAACCAAUGGUA   1
  ***||=||||||||||||||*
targets:1339   CGGAAGUACAUUGGUUACCAA   1359

3.0 PREDICTED: Brassica rapa cation/H(+) antiporter 12-like (LOC103873668), mRNA cation/H(+) antiporter 12-like(LOC103873668) coding protein psRNATarget