ncRNA ID | novel_bra_miR753 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:20797909-20798008 [-] |
Reference genome | Brapa_1.0 |
Source | SRR2912891 |
Length | 21 |
Mature sequence(if miRNA) | 80 - UUUGAGCUUUGCUUUGGAUUG - 100 |
Stem-loop(if miRNA) |
--           -    G          AAGC    UUUAUACUAUCUC   UUUGAGCUUUG CUUU GAUUGUGUUG    UGUU             C   ||||||||||| |||| ||||||||||    ||||             U   AAACUCGAAAC GAAA CUAACACAAC    AUAA             C CU           C    G          ACUU    UCAACCUCUCUCU |
Stem-loop sequence | UUUGAGCUUUGCUUUGGAUUGUGUUGAAGCUGUUUUUAUACUAUCUCCUCUCUCUCUCCAACUAAUAUUCACAACACAAUCGAAAGCCAAAGCUCAAAUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018656455.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103853616 (LOC103853616), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_009128144.2 |
|
3.0 | PREDICTED: Brassica rapa homeobox-leucine zipper protein HDG8-like (LOC103851303), mRNA | homeobox-leucine zipper protein HDG8-like(LOC103851303) | coding protein | psRNATarget |