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BaseInfo

ncRNA ID novel_bra_miR753
Species Brassica rapa
Class miRNA
Genome position ChrA5:20797909-20798008 [-]
Reference genome Brapa_1.0
Source SRR2912891
Length 21
Mature sequence(if miRNA) 80 - UUUGAGCUUUGCUUUGGAUUG - 100
Stem-loop(if miRNA) --           -    G          AAGC    UUUAUACUAUCUC
  UUUGAGCUUUG CUUU GAUUGUGUUG    UGUU             C
  ||||||||||| |||| ||||||||||    ||||             U
  AAACUCGAAAC GAAA CUAACACAAC    AUAA             C
CU           C    G          ACUU    UCAACCUCUCUCU
Stem-loop sequence UUUGAGCUUUGCUUUGGAUUGUGUUGAAGCUGUUUUUAUACUAUCUCCUCUCUCUCUCCAACUAAUAUUCACAACACAAUCGAAAGCCAAAGCUCAAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018656455.1
ncRNA:21   GUUAGGUUUCGUUUCGAGUUU   1
  *|||||*|||=||||||||||
targets:571   AAAUCCCAAGUAAAGCUCAAA   591

2.5 PREDICTED: Brassica rapa uncharacterized LOC103853616 (LOC103853616), mRNA NA coding protein psRNATarget
XM_009128144.2
ncRNA:21   GUUAGGUUUCGUUUCGAGUUU   1
  *||*=|||||||||||||||=
targets:287   GAACUCAAAGCAAAGCUCAAG   307

3.0 PREDICTED: Brassica rapa homeobox-leucine zipper protein HDG8-like (LOC103851303), mRNA homeobox-leucine zipper protein HDG8-like(LOC103851303) coding protein psRNATarget