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BaseInfo

ncRNA ID	novel_bra_miR738
Species	Brassica rapa
Class	miRNA
Genome position	ChrA10:11969294-11969402 [+]
Reference genome	Brapa_1.0
Source	SRR2912891;SRR2912893
Length	21
Mature sequence(if miRNA)	1 - GGAGCAUCAUCAAGAUUCACA - 21
Stem-loop(if miRNA)	-- G                A  AAU   -  AGU        AUUC     AU  A   G AGCAUCAUCAAGAUUC CA   CAU CA   CUAAGCAU    GUGUA  UG A   | |||||||||||||||| ||   ||| ||   ||||||||    |||||  ||   C UCGUAGUAGUUCUAAG GU   GUA GU   GGUUCGUA    UACAU  AC U GA G                A  -AU   U  ---        GUAA     AC  C
Stem-loop sequence	GGAGCAUCAUCAAGAUUCACAAAUCAUCAAGUCUAAGCAUAUUCGUGUAAUUGAAUCCACAUACAUAAUGAUGCUUGGUGUAUGUAUGAGAAUCUUGAUGAUGCUGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128446.2	ncRNA:21   ACACUUAGAACUACUACGAGG   1   ||*||||||||||||||||*| targets:137   UGGGAAUCUUGAUGAUGCUGC   157 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103851575 (LOC103851575), mRNA	uncharacterized LOC103851575(LOC103851575)	coding protein	psRNATarget
XM_009115319.2	ncRNA:21   ACACUUAGAACUACUACGAGG   1   ||*|*|||||||||||||||= targets:351   UGCGCAUCUUGAUGAUGCUCU   371 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103838868 (LOC103838868), mRNA	uncharacterized LOC103838868(LOC103838868)	coding protein	psRNATarget
XM_018658309.1	ncRNA:21   ACACUUAGAACUACUACGAGG   1   ||*|*|||||||||||||||= targets:426   UGCGUAUCUUGAUGAUGCUCU   446 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103863531 (LOC103863531), mRNA	NA	coding protein	psRNATarget
XM_009123141.2	ncRNA:21   ACACUUAGAACUACUACGAGG   1   ||*|*|||||||||||||||= targets:528   UGCGCAUCUUGAUGAUGCUCU   548 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103846245 (LOC103846245), mRNA	uncharacterized LOC103846245(LOC103846245)	coding protein	psRNATarget
XM_009139362.2	ncRNA:21   ACACUUAGAACUACUACGAGG   1   ||*|*|||||||||||||||= targets:608   UGCGCAUCUUGAUGAUGCUCU   628 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103861649 (LOC103861649), mRNA	uncharacterized LOC103861649(LOC103861649)	coding protein	psRNATarget
XM_009117492.1	ncRNA:21   ACACUUAGAACUACUACGAGG   1   |*||==|*||||||||||||| targets:39   UUUGGGUAUUGAUGAUGCUCC   59 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized protein At4g02000-like (LOC103840979), mRNA	uncharacterized protein At4g02000-like(LOC103840979)	coding protein	psRNATarget
XM_009117494.1	ncRNA:21   ACACUUAGAACUACUACGAGG   1   |*||==|*||||||||||||| targets:39   UUUGGGUAUUGAUGAUGCUCC   59 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized protein At4g02000-like (LOC103840981), mRNA	uncharacterized protein At4g02000-like(LOC103840981)	coding protein	psRNATarget