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BaseInfo

ncRNA ID	ath-miR163
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:24884066-24884396 [+]
Reference genome	TAIR10
Source	miRBase
Length	24
Mature sequence(if miRNA)	294 - UUGAAGAGGACUUGGAACUUCGAU - 317
Stem-loop(if miRNA)	C   U      A     -       --             AACGA    A  ACU     CCAGGAACAACUUCCUCCAGGCAGAUGAUACUAAAGUGCUGGAGUUCCCGGUUCCUGAGAGUGAGUCCAUAUCAAAAUGCGCAUUCGUUAUCACUUGGUUGAACCC AC CGG GGAUAA AUCGA GUUCCAA  CCUCUUCAACGAC     UUUC AC   CUCUU                                                                                                          A || ||| |||||| ||||| |||||||  |||||||||||||     |||| ||   |||||                                                                                                          U UG GCC CCUAUU UAGCU CAAGGUU  GGAGAAGUUGCUG     UCGU GA   UGCUA                                                                                                          U   U   C      A     U       CA             --AAA    A  ---     AAUUCGUGACGCGUCAAUGAAGAAGCUGGCACGAGAAGGAUUCUUCUCCAAGGUGCAUCCUCAGUAGUUAAUGCGCAAGGUAAAGUGGAGGUUUAAAUUUAGGGGU
Stem-loop sequence	ACCCGGUGGAUAAAAUCGAGUUCCAACCUCUUCAACGACAACGAUUUCAACACUCUCUUCCAGGAACAACUUCCUCCAGGCAGAUGAUACUAAAGUGCUGGAGUUCCCGGUUCCUGAGAGUGAGUCCAUAUCAAAAUGCGCAUUCGUUAUCACUUGGUUGAACCCAUUUGGGGAUUUAAAUUUGGAGGUGAAAUGGAACGCGUAAUUGAUGACUCCUACGUGGAACCUCUUCUUAGGAAGAGCACGGUCGAAGAAGUAACUGCGCAGUGCUUAAAUCGUAGAUGCUAAAGUCGUUGAAGAGGACUUGGAACUUCGAUAUUAUCCCCCGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_101459.4	ncRNA:24   UAGCUUCAAGGUUCAGGAGAAGUU   1   *||*||*||||||||||||||||* targets:55   UUCCAAUUUCCAAGUCCUCUUCAU   78 Target Full Sequence	2.0	Arabidopsis thaliana XH/XS domain-containing protein (FDM1), mRNA	XH/XS domain-containing protein(FDM1)	coding protein	psRNATarget
NM_148466.3	ncRNA:24   UAGCUUCAAGGUUCAGGAGAAGUU   1   *||--||||=||||||=||||||| targets:564   CUC--AGUUUCAAGUCUUCUUCAA   585 Target Full Sequence	2.5	Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferases superfamily protein mRNA	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein(AT1G15125)	coding protein	psRNATarget
NM_001332151.1	ncRNA:24   UAGCUUCAAGGUUCAGGAGAAGUU   1   *||--||||=||||||=||||||| targets:443   CUC--AGUUUCAAGUCUUCUUCAA   464 Target Full Sequence	2.5	Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferases superfamily protein mRNA	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein(AT1G15125)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
3	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
4	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
5	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).