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BaseInfo

ncRNA ID novel_bra_miR716
Species Brassica rapa
Class miRNA
Genome position ChrA1:22611814-22611878 [-]
Reference genome Brapa_1.0
Source SRR1777714
Length 24
Mature sequence(if miRNA) 42 - UCUUUGGUUGUUGGUCUAAGGCGA - 65
Stem-loop(if miRNA) --        U    GU UA   CGA      
  UCUUUGGU GUUG  C  AGG   UCGAAGU
  |||||||| ||||  |  |||   ||||||U
  AGGGACUA CAGC  G  UCC   AGCUUUA
CA        C    UG GC   AAG      
Stem-loop sequence UCUUUGGUUGUUGGUCUAAGGCGAUCGAAGUUAUUUCGAGAACCUCGGGUCGACCAUCAGGGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009138404.2
ncRNA:24   AGCGGAAUCUGGUUGUUGGUUUCU   1
  *|*|||*||||||*||||||||||
targets:384   CCUCCUCAGACCACCAACCAAAGA   407

2.5 PREDICTED: Brassica rapa cation/H(+) antiporter 28 (LOC103860741), transcript variant X2, mRNA cation/H(+) antiporter 28(LOC103860741) coding protein psRNATarget
XM_018657954.1
ncRNA:24   AGCGGAAUCUGGUUGUUGGUUUCU   1
  *|*|||*||||||*||||||||||
targets:459   CCUCCUCAGACCACCAACCAAAGA   482

2.5 PREDICTED: Brassica rapa cation/H(+) antiporter 28 (LOC103860741), transcript variant X1, mRNA NA coding protein psRNATarget