ncRNA ID | novel_bra_miR705 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA6:19808021-19808231 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1777714 |
Length | 21 |
Mature sequence(if miRNA) | 191 - ACGUAGCGACCGAGCGGGAUG - 211 |
Stem-loop(if miRNA) |
--GUA                  C        G   CU         C         U         GGG     -  --                     A            CGCUCGGUCGCUACGUAG GACCGGGC UGG  CGAGCUUGG CGCUACGUA UGACUGAGC   AUGCG CC  CUCGGUCGCUAUGUAGCGACC AGCUUGG      |||||||||||||||||| |||||||| |||  ||||||||| ||||||||| |||||||||   ||||| ||  ||||||||||||||||||||| ||||||C      GCGAGCCAGCGAUGCAUC CUGGCUCG GCU  GUUCGAGCC GCGAUGCAU ACUGACUCG   UGCGC GG  GAGUCAGCGAUGCAUCGCUGG UCGAGCU GUAGG                  A        A   UG         A         C         ---     A  AC                     A       |
Stem-loop sequence | GUACGCUCGGUCGCUACGUAGCGACCGGGCGUGGCUCGAGCUUGGCCGCUACGUAUUGACUGAGCGGGAUGCGCCCUCGGUCGCUAUGUAGCGACCAAGCUUGGCUCGAGCUAGGUCGCUACGUAGCGACUGAGCAGGACGCGUGCUCAGUCACUACGUAGCGACCGAGCUUGGUUCGAGCUCGGUCACUACGUAGCGACCGAGCGGGAUG |