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BaseInfo

ncRNA ID novel_bra_miR701
Species Brassica rapa
Class miRNA
Genome position ChrA6:15947378-15947513 [+]
Reference genome Brapa_1.0
Source SRR1777714
Length 24
Mature sequence(if miRNA) 113 - GAGGAAAAUUCAUUUCGUCGGAAU - 136
Stem-loop(if miRNA) --         AA      --          AUA   -A  -AAU        CAA            A  A
  UCCGACGGA  AUGAAU  UCCUCGGAAU   CCG  GG    UUCCGAGG   UUCCGAGGAAAC CA A
  |||||||||  ||||||  ||||||||||   |||  ||    ||||||||   |||||||||||| || A
  AGGCUGCUU  UACUUA  AGGAGCCUUA   GGC  CC    AAGGCUCC   AAGGUUCCUUUG GU U
UA         --      AA          --A   AG  AUAU        UUG            -  U
Stem-loop sequence UCCGACGGAAAAUGAAUUCCUCGGAAUAUACCGAGGAAUUUCCGAGGCAAUUCCGAGGAAACACAAAAUUUGGUUUCCUUGGAAGUUCCUCGGAAUAUACCGACGGAAUUCCGAGGAAAAUUCAUUUCGUCGGAAU