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BaseInfo

ncRNA ID novel_bra_miR693
Species Brassica rapa
Class miRNA
Genome position ChrA2:6983727-6983852 [-]
Reference genome Brapa_1.0
Source SRR1777714
Length 21
Mature sequence(if miRNA) 106 - AUACUAAAAUCUUGAACUGAA - 126
Stem-loop(if miRNA) --         U       UG               GUA   U      UG          GG
  AUACUAAAA CUUGAAC  AACUAACCAAAUUUC   CCG AAUAAC  AACUUUUUUU  U
  ||||||||| |||||||  |||||||||||||||   ||| ||||||  ||||||||||
  UAUGGUUUU GGACUUG  UUGAUUGGUUUAAAG   GGC UUAUUG  UUGAAAAAAA  C
GA         U       GU               AUG   U      GU          GU
Stem-loop sequence AUACUAAAAUCUUGAACUGAACUAACCAAAUUUCGUACCGUAAUAACUGAACUUUUUUUGGUCUGAAAAAAAGUUUGGUUAUUUCGGGUAGAAAUUUGGUUAGUUUGGUUCAGGUUUUUGGUAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018656471.1
ncRNA:21   AAGUCAAGUUCUAAAAUCAUA   1
  *||*||||||||||||=||||
targets:26   CUCUGUUCAAGAUUUUGGUAU   46

2.5 PREDICTED: Brassica rapa ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1-like (LOC103854091), mRNA NA coding protein psRNATarget