ncRNA ID | novel_bra_miR693 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:6983727-6983852 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1777714 |
Length | 21 |
Mature sequence(if miRNA) | 106 - AUACUAAAAUCUUGAACUGAA - 126 |
Stem-loop(if miRNA) |
--         U       UG               GUA   U      UG          GG   AUACUAAAA CUUGAAC  AACUAACCAAAUUUC   CCG AAUAAC  AACUUUUUUU  U   ||||||||| |||||||  |||||||||||||||   ||| ||||||  ||||||||||   UAUGGUUUU GGACUUG  UUGAUUGGUUUAAAG   GGC UUAUUG  UUGAAAAAAA  C GA         U       GU               AUG   U      GU          GU |
Stem-loop sequence | AUACUAAAAUCUUGAACUGAACUAACCAAAUUUCGUACCGUAAUAACUGAACUUUUUUUGGUCUGAAAAAAAGUUUGGUUAUUUCGGGUAGAAAUUUGGUUAGUUUGGUUCAGGUUUUUGGUAUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018656471.1 |
|
2.5 | PREDICTED: Brassica rapa ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1-like (LOC103854091), mRNA | NA | coding protein | psRNATarget |