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BaseInfo

ncRNA ID	novel_bra_miR688
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:17453969-17454113 [+]
Reference genome	Brapa_1.0
Source	SRR1776899
Length	24
Mature sequence(if miRNA)	122 - UCCUUGUCGCUCCACUGAAUUGGC - 145
Stem-loop(if miRNA)	--          A                                                        CG    CAAUUCAGUG AGCGACAAGGAGAAAGUGGACGGAAGUGCAGCUGGUUUGUACUUGAGAGGAACCUC  AC   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |C   GUUAAGUCAC UCGCUGUUCCUCUUUCACCUGUCUUCACGUCGACCAAACAUGAACUCUCCUUGGAG  UG CG          C                                                        AU
Stem-loop sequence	CAAUUCAGUGAAGCGACAAGGAGAAAGUGGACGGAAGUGCAGCUGGUUUGUACUUGAGAGGAACCUCCGACCGUUAGAGGUUCCUCUCAAGUACAAACCAGCUGCACUUCUGUCCACUUUCUCCUUGUCGCUCCACUGAAUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128755.2	ncRNA:24   CGGUUAAGUCACCUCGCUGUUCCU   1   ||||||||||||||||*||||||| targets:213   GCCAAUUCAGUGGAGCCACAAGGA   236 Target Full Sequence	1.5	PREDICTED: Brassica rapa protein ENHANCED DOWNY MILDEW 2 (LOC103851881), transcript variant X2, mRNA	protein ENHANCED DOWNY MILDEW 2(LOC103851881)	coding protein	psRNATarget
XM_009128754.2	ncRNA:24   CGGUUAAGUCACCUCGCUGUUCCU   1   ||||||||||||||||*||||||| targets:222   GCCAAUUCAGUGGAGCCACAAGGA   245 Target Full Sequence	1.5	PREDICTED: Brassica rapa protein ENHANCED DOWNY MILDEW 2 (LOC103851881), transcript variant X1, mRNA	protein ENHANCED DOWNY MILDEW 2(LOC103851881)	coding protein	psRNATarget
XM_009122698.2	ncRNA:24   CGGUUAAGUCACCUCGCUGUUCCU   1   |=||-|*||||||||=|||||||| targets:1459   GUCA-UCCAGUGGAGUGACAAGGA   1481 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103845808 (LOC103845808), mRNA	uncharacterized LOC103845808(LOC103845808)	coding protein	psRNATarget