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BaseInfo

ncRNA ID novel_bra_miR686
Species Brassica rapa
Class miRNA
Genome position ChrA1:28151949-28152004 [+]
Reference genome Brapa_1.0
Source SRR1776899
Length 24
Mature sequence(if miRNA) 33 - AGAGGAAAAAAUGGAGUAGGGAUG - 56
Stem-loop(if miRNA) --            A  CA      UUC
  UCUUUACUCCAU UU  CUUUUA   U
  |||||||||||| ||  ||||||
  AGGGAUGAGGUA AA  GGAGAU   A
GU            A  AA      UUU
Stem-loop sequence UCUUUACUCCAUAUUCACUUUUAUUCUAUUUUAGAGGAAAAAAUGGAGUAGGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009133654.2
ncRNA:24   GUAGGGAUGAGGUAAAAAAGGAGA   1
  |||==||*|||||||||*||||||
targets:24   CAUUUCUUCUCCAUUUUAUCCUCU   47

2.5 PREDICTED: Brassica rapa serine carboxypeptidase-like 47 (LOC103856543), mRNA serine carboxypeptidase-like 47(LOC103856543) coding protein psRNATarget