ncRNA ID | novel_bra_miR684 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:34213154-34213357 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGGAUAUUUUUGGUUCUCGGGUAA - 24 |
Stem-loop(if miRNA) |
--U  AUA         C      AA     U   ----CU     A     ----AG        GU    UU   G  UU     -AUU    U       UUUUU    GG   UUUUUGGUU UCGGGU  AAUUU GGU      UUUAG UAUUU      UUAUUGUG  AUUU  UUU AU  UGAGU    UUCG GUUUUGA     U    ||   ||||||||| ||||||  ||||| |||      ||||| |||||      ||||||||  ||||  ||| ||  |||||    |||| |||||||    CC   AAAAAUCAA AGUCCA  UUAAA UCA      AAGUU AUAGA      AAUGAUAC  UAAA  GAA UA  ACUUA    GAGC CAAGGCU     G UAG  AAG         -      -G     C   AUUAUU     C     CAUUUA        AU    CC   G  UU     GGUC    -       UUUCG |
Stem-loop sequence | UGGAUAUUUUUGGUUCUCGGGUAAAAUUUUGGUCUUUUAGAUAUUUAGUUAUUGUGGUAUUUUUUUUGAUUUUGAGUAUUUUCGUGUUUUGAUUUUUUGGCUUUUCGGAACCGAGCUGGAUUCAUUAUGAAGCCAAAUUACAUAGUAAAUUUACAGAUACUUGAAUUAUUAACUCAAAUUGACCUGAAACUAAAAAGAACCGAU |