ncRNA ID | novel_bra_miR679 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:8297683-8297861 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGUAGCGACCGAGCGAAACGAGUG - 24 |
Stem-loop(if miRNA) |
--U              AA    G                            -AU  UCC                            AU    GUAGCGACCGAGCG  ACGA UGCUCGGUCGCUACGUAGCGACCGAGCG   CG   CGCUCGGUCGCUACGUAGCGACCGAGCG  C    ||||||||||||||  |||| ||||||||||||||||||||||||||||   ||   ||||||||||||||||||||||||||||  G    CAUCGCUGGCUCGC  UGCU GCGAGCCAGCGAUGCAUCGCUGGCUCGC   GC   GCGAGCCAGCGAUGCAUCGCUGGCUCGC  U AUG              CC    A                            CCU  -UA                            CC |
Stem-loop sequence | UGUAGCGACCGAGCGAAACGAGUGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUA |