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BaseInfo

ncRNA ID novel_bra_miR678
Species Brassica rapa
Class miRNA
Genome position ChrA7:14381006-14381209 [+]
Reference genome Brapa_1.0
Source SRR1776899
Length 24
Mature sequence(if miRNA) 1 - AAUUCUAUUAUAGAGUUGGAUUUG - 24
Stem-loop(if miRNA) --                                    A                       A                   U            U      U
  AAUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUC CUCUAUAAUAGAGUUACUCUAUA UAGAGUGAAAUAUAGAGUA UCUUGUUUUUUU ACUCUA A
  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
  UUGAGAUAAUAUCUCAACUUAAACGAGGUUACCAAG GAGAUAUUAUCUCAAUGAGAUAU AUCUCACUUUAUAUCUCAU AGAAUAAAAAAA UGAGGU U
CA                                    G                       -                   U            -      U
Stem-loop sequence AAUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGAGUAUUCUUGUUUUUUUUACUCUAUAUUUGGAGUAAAAAAAUAAGAUUACUCUAUAUUUCACUCUAUAUAGAGUAACUCUAUUAUAGAGGGAACCAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUAC