ncRNA ID | novel_bra_miR678 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:14381006-14381209 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUUCUAUUAUAGAGUUGGAUUUG - 24 |
Stem-loop(if miRNA) |
--                                    A                       A                   U            U      U   AAUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUC CUCUAUAAUAGAGUUACUCUAUA UAGAGUGAAAUAUAGAGUA UCUUGUUUUUUU ACUCUA A   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||   UUGAGAUAAUAUCUCAACUUAAACGAGGUUACCAAG GAGAUAUUAUCUCAAUGAGAUAU AUCUCACUUUAUAUCUCAU AGAAUAAAAAAA UGAGGU U CA                                    G                       -                   U            -      U |
Stem-loop sequence | AAUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGAGUAUUCUUGUUUUUUUUACUCUAUAUUUGGAGUAAAAAAAUAAGAUUACUCUAUAUUUCACUCUAUAUAGAGUAACUCUAUUAUAGAGGGAACCAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUAC |