Search result

BaseInfo

ncRNA ID	novel_bra_miR673
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:15770148-15770302 [+]
Reference genome	Brapa_1.0
Source	SRR1776899
Length	24
Mature sequence(if miRNA)	132 - AGUAAAUUAUGGAGUGGGGAUGGA - 155
Stem-loop(if miRNA)	--                      AAA     A           AG    -----U          UAA   UUU  A   U   CAUCUCUAUUCCAUAAUUUACU   AAAAU GAGUGGAAAAU  AGUA      GAACAAAAAA   AUU   UU CCA U   ||||||||||||||||||||||   ||||| |||||||||||  ||||      ||||||||||   |||   || |||   GUAGGGGUGAGGUAUUAAAUGA   UUUUA CUCACCUUUUA  UCGU      UUUGUUUUUU   UAA   AA GGU U AG                      -CG     C           CU    CAUUUU          CAC   --U  -   A
Stem-loop sequence	CAUCUCUAUUCCAUAAUUUACUAAAAAAAUAGAGUGGAAAAUAGAGUAUGAACAAAAAAUAAAUUUUUUUACCAUUUAUGGAAUAAUCACUUUUUUGUUUUUUUACUGCUUCAUUUUCCACUCCAUUUUGCAGUAAAUUAUGGAGUGGGGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018655293.1	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   |||||||=|||||||||||||||| targets:1959   UCCAUCCUCACUCCAUAAUUUACU   1982 Target Full Sequence	1.0	PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009137393.2	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   |||||==||||||||||||||||| targets:1099   UCCAUUUCCACUCCAUAAUUUACU   1122 Target Full Sequence	2.0	PREDICTED: Brassica rapa zinc finger protein AZF2-like (LOC103859816), mRNA	zinc finger protein AZF2-like(LOC103859816)	coding protein	psRNATarget
XM_018653025.1	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   ||||*|||*||||||||*|||||| targets:326   UCCAACCCAACUCCAUAUUUUACU   349 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC108869048 (LOC108869048), mRNA	NA	coding protein	psRNATarget