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BaseInfo

ncRNA ID novel_bra_miR672
Species Brassica rapa
Class miRNA
Genome position ChrA5:8127958-8128059 [-]
Reference genome Brapa_1.0
Source SRR1776899
Length 24
Mature sequence(if miRNA) 1 - AGAGUAGAAAAUAGAGUGAUGAGC - 24
Stem-loop(if miRNA) --GGU              U   A            A U  AUAAUA    UUG
     UUACUCUAUUUUUU ACU UAAAAUAGAGUA C CA      GAGU   A
     |||||||||||||| ||| |||||||||||| | ||      ||||
     AGUGAGAUAAAAGA UGA AUUUUAUCUUAU G GU      CUCA   U
CGAGU              -   G            - -  ---AAC    UUU
Stem-loop sequence GGUUUACUCUAUUUUUUUACUAUAAAAUAGAGUAACUCAAUAAUAGAGUUUGAUUUUACUCCAAUGGUAUUCUAUUUUAGAGUAGAAAAUAGAGUGAUGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018655384.1
ncRNA:24   CGAGUAGUG-AGAUAAAAGAUGAGA   1
  *||=*||||-||||||||||||||*
targets:165   CCUUUUCACGUCUAUUUUCUACUCG   189

3.0 PREDICTED: Brassica rapa protein PNS1 (LOC103845896), mRNA NA coding protein psRNATarget