ncRNA ID | novel_bra_miR672 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:8127958-8128059 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAGUAGAAAAUAGAGUGAUGAGC - 24 |
Stem-loop(if miRNA) |
--GGU              U   A            A U  AUAAUA    UUG      UUACUCUAUUUUUU ACU UAAAAUAGAGUA C CA      GAGU   A      |||||||||||||| ||| |||||||||||| | ||      ||||      AGUGAGAUAAAAGA UGA AUUUUAUCUUAU G GU      CUCA   U CGAGU              -   G            - -  ---AAC    UUU |
Stem-loop sequence | GGUUUACUCUAUUUUUUUACUAUAAAAUAGAGUAACUCAAUAAUAGAGUUUGAUUUUACUCCAAUGGUAUUCUAUUUUAGAGUAGAAAAUAGAGUGAUGAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018655384.1 |
|
3.0 | PREDICTED: Brassica rapa protein PNS1 (LOC103845896), mRNA | NA | coding protein | psRNATarget |