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BaseInfo

ncRNA ID novel_bra_miR666
Species Brassica rapa
Class miRNA
Genome position ChrA4:2035294-2035428 [+]
Reference genome Brapa_1.0
Source SRR1776899
Length 24
Mature sequence(if miRNA) 1 - AACUAAUAGUUGGCUGCGCGAAAU - 24
Stem-loop(if miRNA) --       AG   GC  C         A  AC      GUC   CA    CU   G       AAA
  AACUAAU  UUG  UG GCGAAAUUG GA  AUAAUA   AAC  UUAA  AAU AACGGAA   U
  |||||||  |||  || ||||||||| ||  ||||||   |||  ||||  ||| |||||||   A
  UUGAUUA  GAC  AC CGUUUUGAU CU  UAUUAU   UUG  AAUU  UUA UUGCUUU   A
AA       GU   UU  A         A  AA      AAA   AC    UU   A       GGC
Stem-loop sequence AACUAAUAGUUGGCUGCGCGAAAUUGAGAACAUAAUAGUCAACCAUUAACUAAUGAACGGAAAAAUAACGGUUUCGUUAAUUUUUUAACAGUUAAAUAUUAUAAUCAUAGUUUUGCACAUUCAGUGAUUAGUUAA