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BaseInfo

ncRNA ID novel_bra_miR664
Species Brassica rapa
Class miRNA
Genome position ChrA3:5714067-5714145 [-]
Reference genome Brapa_1.0
Source SRR1776899
Length 24
Mature sequence(if miRNA) 56 - AGAGGAAAAUAUAGAGGAAAGUUA - 79
Stem-loop(if miRNA) ---  A              AAA       U UG      U
   AG GGAAAAUAUAGAGG   GUUAUUU U  CCUCUA A
   || ||||||||||||||   ||||||| |  ||||||
   UC CCUUUUAUAUCUCU   CAAUAAA A  GGAGAU U
AAU  -              AUA       - GU      U
Stem-loop sequence AGAGGAAAAUAUAGAGGAAAGUUAUUUUUUGCCUCUAUAUUUAGAGGUGAAAAUAACAUAUCUCUAUAUUUUCCCUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009138223.1
ncRNA:24   AUUGAAAGG-AGAUAUAAAAGGAGA   1
  **|=|||||-|=|||||||||||||
targets:44   CCAUUUUCCCUUUAUAUUUUCCUCU   68

3.0 PREDICTED: Brassica rapa NAC domain-containing protein 100 (LOC103860593), mRNA NAC domain-containing protein 100(LOC103860593) coding protein psRNATarget