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BaseInfo

ncRNA ID novel_bra_miR661
Species Brassica rapa
Class miRNA
Genome position ChrA2:13950850-13950909 [+]
Reference genome Brapa_1.0
Source SRR1776889;SRR1777714
Length 24
Mature sequence(if miRNA) 1 - AAAUAUUGUUGAAACAGGAGGGCA - 24
Stem-loop(if miRNA) --A                G     A   CA
   AAUAUUGUUGAAACAG AGGGC CCU  A
   |||||||||||||||| ||||| |||
   UUAUGAUAAUUUUGUC UUCCG GGA  A
UAG                -     -   AA
Stem-loop sequence AAAUAUUGUUGAAACAGGAGGGCACCUCAAAAAAGGGCCUUCUGUUUUAAUAGUAUUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009142901.1
ncRNA:24   ACGGGAGGACAAAGUUGUUAUAAA   1
  |||=-|||||*||||||||*||||
targets:172   UGCU-UCCUGGUUCAACAACAUUU   194

2.5 PREDICTED: Brassica rapa uncharacterized LOC103865123 (LOC103865123), mRNA uncharacterized LOC103865123(LOC103865123) coding protein psRNATarget