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BaseInfo

ncRNA ID	novel_bra_miR655
Species	Brassica rapa
Class	miRNA
Genome position	ChrA1:9508146-9508230 [+]
Reference genome	Brapa_1.0
Source	SRR1776889
Length	24
Mature sequence(if miRNA)	62 - GUUGUUGUGGUGAUGAUUGAUUGG - 85
Stem-loop(if miRNA)	--   G      G  G     A     -U   ACUGUUAAAUG   AAU GAUCAU AU CAUAA AACCC  CAU           G   ||| |||||| || ||||| |||||  |||           G   UUA UUAGUA UG GUGUU UUGGG  CUG           A GG   G      G  -     G     UU   UCAAGUAAUUC
Stem-loop sequence	AAUGGAUCAUGAUGCAUAAAAACCCUCAUACUGUUAAAUGGGACUUAAUGAACUGUCUUGGGUUGUUGUGGUGAUGAUUGAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JN979481.1	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-||*||||||||||*||||| targets:2290   CCAA-CAUUCAUCACCACCACAAC   2312 Target Full Sequence	2.5	Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009109696.2	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   |=*|||||*||*|||||||||||| targets:1412   CUCAUCAACCACCACCACAACAAC   1435 Target Full Sequence	2.5	PREDICTED: Brassica rapa trihelix transcription factor GTL1-like (LOC103833623), transcript variant X1, mRNA	trihelix transcription factor GTL1-like(LOC103833623)	coding protein	psRNATarget
XM_009109698.2	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   |=*|||||*||*|||||||||||| targets:1414   CUCAUCAACCACCACCACAACAAC   1437 Target Full Sequence	2.5	PREDICTED: Brassica rapa trihelix transcription factor GTL1-like (LOC103833623), transcript variant X2, mRNA	trihelix transcription factor GTL1-like(LOC103833623)	coding protein	psRNATarget
XM_009118600.2	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-||*||||||||||*||||| targets:297   CCAA-CAUUCAUCACCACCACAAC   319 Target Full Sequence	2.5	PREDICTED: Brassica rapa dof zinc finger protein DOF3.7 (LOC103842004), transcript variant X1, mRNA	dof zinc finger protein DOF3.7(LOC103842004)	coding protein	psRNATarget
XM_009118601.1	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-||*||||||||||*||||| targets:289   CCAA-CAUUCAUCACCACCACAAC   311 Target Full Sequence	2.5	PREDICTED: Brassica rapa dof zinc finger protein DOF3.7 (LOC103842004), transcript variant X2, mRNA	dof zinc finger protein DOF3.7(LOC103842004)	coding protein	psRNATarget
XM_009118602.2	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-||*||||||||||*||||| targets:224   CCAA-CAUUCAUCACCACCACAAC   246 Target Full Sequence	2.5	PREDICTED: Brassica rapa dof zinc finger protein DOF3.7 (LOC103842004), transcript variant X3, mRNA	dof zinc finger protein DOF3.7(LOC103842004)	coding protein	psRNATarget
XM_009118603.1	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-||*||||||||||*||||| targets:299   CCAA-CAUUCAUCACCACCACAAC   321 Target Full Sequence	2.5	PREDICTED: Brassica rapa dof zinc finger protein DOF3.7 (LOC103842004), transcript variant X4, mRNA	dof zinc finger protein DOF3.7(LOC103842004)	coding protein	psRNATarget
XM_009111138.2	ncRNA:24   GGUUA-GUUAGUAGUGGUGUUGUUG   1   =|||*-|||*||||||||||||||| targets:348   UCAACACAACCAUCACCACAACAAC   372 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein SHORT-ROOT-like (LOC103835041), mRNA	protein SHORT-ROOT-like(LOC103835041)	coding protein	psRNATarget
XM_009119676.2	ncRNA:24   GGUUAGUUAGUAGUGGUGUUGUUG   1   ||||-|=|*||||||||||||||* targets:1150   CCAA-CGAGCAUCACCACAACAAG   1172 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein HOTHEAD (LOC103842989), mRNA	protein HOTHEAD(LOC103842989)	coding protein	psRNATarget