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BaseInfo

ncRNA ID novel_bra_miR653
Species Brassica rapa
Class miRNA
Genome position ChrA9:5183326-5183373 [+]
Reference genome Brapa_1.0
Source SRR1776889
Length 24
Mature sequence(if miRNA) 1 - AGUAGAAAAUGGAGUAGGGUUGGA - 24
Stem-loop(if miRNA) --   A                  
  AGU GAAAAUGGAGUAGGGUUGG
  ||| ||||||||||||||||||A
  UCA CUUUUAUCUCAUUUUAACG
UU   -                  
Stem-loop sequence AGUAGAAAAUGGAGUAGGGUUGGAGCAAUUUUACUCUAUUUUCACUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009104547.2
ncRNA:24   AGGUUGGGAUGAGGUAAAAGAUGA   1
  **||=||||*||*|||||||||||
targets:1167   CACAGCCCUUCUACAUUUUCUACU   1190

2.5 PREDICTED: Brassica rapa F-box protein At1g30790-like (LOC103828913), mRNA F-box protein At1g30790-like(LOC103828913) coding protein psRNATarget