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BaseInfo

ncRNA ID novel_bra_miR649
Species Brassica rapa
Class miRNA
Genome position ChrA9:562309-562364 [-]
Reference genome Brapa_1.0
Source SRR1776889;SRR1776899
Length 24
Mature sequence(if miRNA) 1 - AGAGGAAAAAAUGGAGUAGGGAUG - 24
Stem-loop(if miRNA) --       G    A   A      CAC
  UCCUUAC CCAU UUU CUUUUA   C
  ||||||| |||| ||| ||||||
  AGGGAUG GGUA AAA GGAGAU   A
GU       A    A   A      UUU
Stem-loop sequence UCCUUACGCCAUAUUUACUUUUACACCAUUUUAGAGGAAAAAAUGGAGUAGGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009133654.2
ncRNA:24   GUAGGGAUGAGGUAAAAAAGGAGA   1
  |||==||*|||||||||*||||||
targets:24   CAUUUCUUCUCCAUUUUAUCCUCU   47

2.5 PREDICTED: Brassica rapa serine carboxypeptidase-like 47 (LOC103856543), mRNA serine carboxypeptidase-like 47(LOC103856543) coding protein psRNATarget