ncRNA ID | novel_bra_miR642 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:1528550-1528605 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776889 |
Length | 24 |
Mature sequence(if miRNA) | 33 - ACUGUUUCCUCGUAAGCUCGACGU - 56 |
Stem-loop(if miRNA) |
-AC              CUC     AA    UGUUUCCUCGUAAG   GACGU  A    ||||||||||||||   |||||  A    AUAAAGGAGCAUUU   CUGCG  A UUU              CUU     AU |
Stem-loop sequence | ACUGUUUCCUCGUAAGCUCGACGUAAAAAUAGCGUCUUCUUUACGAGGAAAUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009130071.2 |
|
3.0 | PREDICTED: Brassica rapa V-type proton ATPase catalytic subunit A-like (LOC103853150), mRNA | V-type proton ATPase catalytic subunit A-like(LOC103853150) | coding protein | psRNATarget |