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BaseInfo

ncRNA ID novel_bra_miR642
Species Brassica rapa
Class miRNA
Genome position ChrA7:1528550-1528605 [-]
Reference genome Brapa_1.0
Source SRR1776889
Length 24
Mature sequence(if miRNA) 33 - ACUGUUUCCUCGUAAGCUCGACGU - 56
Stem-loop(if miRNA) -AC              CUC     AA
   UGUUUCCUCGUAAG   GACGU  A
   ||||||||||||||   |||||  A
   AUAAAGGAGCAUUU   CUGCG  A
UUU              CUU     AU
Stem-loop sequence ACUGUUUCCUCGUAAGCUCGACGUAAAAAUAGCGUCUUCUUUACGAGGAAAUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009130071.2
ncRNA:24   UGCAGCUCGAAUGCUCCUUUGUCA   1
  ***||*||=||||||||||||||*
targets:367   CAUUCAAGUUUACGAGGAAACAGC   390

3.0 PREDICTED: Brassica rapa V-type proton ATPase catalytic subunit A-like (LOC103853150), mRNA V-type proton ATPase catalytic subunit A-like(LOC103853150) coding protein psRNATarget