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BaseInfo

ncRNA ID ath-miRf10775-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UUGAUCUUUCCACCAUCUAC - NA
Stem-loop(if miRNA)                            ---   AA  -    AAAAAAA
AGGGAAUAUCUUGAUCUUUCCACCAUC   UAC  AG AAUA       A
|||||||||||||||||||||||||||   |||  || ||||
UUCCUUAUAGAACUAGAAAGGUGGUGG   AUG  UC UUAU       G
                           UUU   GA  A    AACCUUC
Stem-loop sequence AGGGAAUAUCUUGAUCUUUCCACCAUCUACAAAGAAUAAAAAAAAAGCUUCCAAUAUUACUAGGUAUUUGGUGGUGGAAAGAUCAAGAUAUUCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX824128.1
ncRNA:20   CAUCUACCACCUUUCUAGUU   1
  |*||||||||||||||||||
targets:891   GAAGAUGGUGGAAAGAUCAA   910

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_114026.2
ncRNA:20   CAUCUACCACCUUUCUAGUU   1
  **|*||||||||||||||||
targets:1000   CCAAAUGGUGGAAAGAUCAA   1019

2.0 Arabidopsis thaliana Terpenoid cyclases/Protein prenyltransferases superfamily protein mRNA Terpenoid cyclases/Protein prenyltransferases superfamily protein(AT3G32030) coding protein psRNATarget
KM397376.1
ncRNA:20   CAUCUACCACCUUUCUAGUU   1
  ||||*|||||||||||*|||
targets:286   GUAGUUGGUGGAAAGAACAA   305

2.5 Arabidopsis thaliana structural maintenance of chromosomes protein 2 mRNA, partial cds NA coding protein psRNATarget
NM_114614.4
ncRNA:20   CAUCUACCACCUUUCUAGUU   1
  ||||*|||||||||||*|||
targets:543   GUAGUUGGUGGAAAGAACAA   562

2.5 Arabidopsis thaliana Structural maintenance of chromosomes (SMC) family protein (ATSMC2), mRNA Structural maintenance of chromosomes (SMC) family protein(ATSMC2) coding protein psRNATarget
NM_001339310.1
ncRNA:20   CAUCUACCACCUUUCUAGUU   1
  ||||*|||||||||||*|||
targets:597   GUAGUUGGUGGAAAGAACAA   616

2.5 Arabidopsis thaliana Structural maintenance of chromosomes (SMC) family protein (ATSMC2), mRNA Structural maintenance of chromosomes (SMC) family protein(ATSMC2) coding protein psRNATarget