Search result

BaseInfo

ncRNA ID	novel_bra_miR632
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:9506170-9506261 [+]
Reference genome	Brapa_1.0
Source	SRR1776889
Length	22
Mature sequence(if miRNA)	71 - CCACCCAUACCAUACAGACCCU - 92
Stem-loop(if miRNA)	--U         -      CU   U   CA  A        UUUAC    GUCUGUAUG UGUGGG  GAG AGG  CA UCACAGCU     U    ||||||||| ||||||  ||| |||  || ||||||||     C    CAGACAUAC AUACCC  CUC UCC  GU AGUGUUGG     A UCC         C      AC   U   AG  A        UCUAG
Stem-loop sequence	UGUCUGUAUGUGUGGGCUGAGUAGGCACAAUCACAGCUUUUACUCAGAUCUGGUUGUGAAUGGACCUUCUCCACCCAUACCAUACAGACCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009119470.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   *||||||||||||||||||||| targets:789   UGGGUCUGUAUGGUAUGGGUGG   810 Target Full Sequence	0.0	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103842806), mRNA	disease resistance protein RFL1-like(LOC103842806)	coding protein	psRNATarget
XM_009119851.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   **|||||||||||||||||||| targets:775   UUGGUCUGUAUGGUAUGGGUGG   796 Target Full Sequence	0.0	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103843141), mRNA	disease resistance protein RFL1-like(LOC103843141)	coding protein	psRNATarget
XM_009112499.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   *|||*||*|||||||||||||| targets:620   UGGGACUUUAUGGUAUGGGUGG   641 Target Full Sequence	2.0	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103836251), mRNA	disease resistance protein TAO1-like(LOC103836251)	coding protein	psRNATarget
XM_018655415.1	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   *||||*|||||||*|||||||| targets:367   UGGGUAUGUAUGGCAUGGGUGG   388 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable disease resistance protein At1g12280 (LOC103843924), mRNA	NA	coding protein	psRNATarget
XM_009139950.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   *|||||||*||||*|||||||| targets:646   UGGGUCUGCAUGGAAUGGGUGG   667 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable disease resistance protein At1g61190 (LOC103862247), mRNA	probable disease resistance protein At1g61190(LOC103862247)	coding protein	psRNATarget
XM_009119847.1	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   **||||||*||||*|||||||| targets:196   UUGGUCUGCAUGGAAUGGGUGG   217 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103843137), transcript variant X4, mRNA	disease resistance protein RFL1-like(LOC103843137)	coding protein	psRNATarget
XM_009119846.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   **||||||*||||*|||||||| targets:1490   UUGGUCUGCAUGGAAUGGGUGG   1511 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103843137), transcript variant X3, mRNA	disease resistance protein RFL1-like(LOC103843137)	coding protein	psRNATarget
XM_009119845.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   **||||||*||||*|||||||| targets:1693   UUGGUCUGCAUGGAAUGGGUGG   1714 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103843137), transcript variant X2, mRNA	disease resistance protein RFL1-like(LOC103843137)	coding protein	psRNATarget
XM_009119844.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   **||||||*||||*|||||||| targets:1817   UUGGUCUGCAUGGAAUGGGUGG   1838 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein RFL1-like (LOC103843137), transcript variant X1, mRNA	disease resistance protein RFL1-like(LOC103843137)	coding protein	psRNATarget
XM_009114448.2	ncRNA:22   UCCCAGACAUACCAUACCCACC   1   *||||*|**||||||||||||| targets:526   UGGGUAUCCAUGGUAUGGGUGG   547 Target Full Sequence	3.0	PREDICTED: Brassica rapa putative disease resistance protein At1g63350 (LOC103838035), mRNA	putative disease resistance protein At1g63350(LOC103838035)	coding protein	psRNATarget