Search result

BaseInfo

ncRNA ID novel_bra_miR629
Species Brassica rapa
Class miRNA
Genome position ChrA5:11413224-11413359 [-]
Reference genome Brapa_1.0
Source SRR1776889;SRR1777714
Length 24
Mature sequence(if miRNA) 1 - GAAGAAUUCAUUUUCCGUCGGAAC - 24
Stem-loop(if miRNA) --       --           CC       --U   UC     A        A              -  A
  UCCGACG  AGAUGAAUUUU  UCGGAAU   CCG  GGAAU UUCCGAGG AAUUCCGAGGAAGC CA A
  |||||||  |||||||||||  |||||||   |||  ||||| |||||||| |||||||||||||| || U
  AGGCUGC  UUUACUUAAGA  AGCCUUA   GGC  CCUUA AAGGCUCC UUAAGGCUUCUUUG GU U
CA       CU           --       UAU   -U     -        G              U  U
Stem-loop sequence UCCGACGAGAUGAAUUUUCCUCGGAAUUCCGUCGGAAUAUUCCGAGGAAAUUCCGAGGAAGCCAAAUUUUGUGUUUCUUCGGAAUUGCCUCGGAAAUUCCUCGGUAUAUUCCGAAGAAUUCAUUUUCCGUCGGAAC