ncRNA ID | novel_bra_miR627 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:20174789-20174870 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1485258 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUGUGUUCUCAGGUCACCCCU - 21 |
Stem-loop(if miRNA) |
--GA   U A            UC   --UU     UUUAAG     GUG C UGAGAACACGAA  CUC    GUUUC      A     ||| | ||||||||||||  |||    |||||      U     CAC G ACUCUUGUGUUU  GAG    CAAAG      U UCCC   U G            -U   UUAC     UCACCU |
Stem-loop sequence | GAGUGUCAUGAGAACACGAAUCCUCUUGUUUCUUUAAGAUUUCCACUGAAACCAUUGAGUUUUGUGUUCUCAGGUCACCCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009149245.2 |
|
2.5 | PREDICTED: Brassica rapa PRA1 family protein G1 (LOC103871029), mRNA | PRA1 family protein G1(LOC103871029) | coding protein | psRNATarget |