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BaseInfo

ncRNA ID novel_bra_miR627
Species Brassica rapa
Class miRNA
Genome position ChrA2:20174789-20174870 [-]
Reference genome Brapa_1.0
Source SRR1485258
Length 21
Mature sequence(if miRNA) 1 - UUGUGUUCUCAGGUCACCCCU - 21
Stem-loop(if miRNA) --GA   U A            UC   --UU     UUUAAG
    GUG C UGAGAACACGAA  CUC    GUUUC      A
    ||| | ||||||||||||  |||    |||||      U
    CAC G ACUCUUGUGUUU  GAG    CAAAG      U
UCCC   U G            -U   UUAC     UCACCU
Stem-loop sequence GAGUGUCAUGAGAACACGAAUCCUCUUGUUUCUUUAAGAUUUCCACUGAAACCAUUGAGUUUUGUGUUCUCAGGUCACCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009149245.2
ncRNA:21   UCCCCACUGGACUCUUGUGUU   1
  **||*||||||||||||*|||
targets:19   UUGGUUGACCUGAGAACUCAA   39

2.5 PREDICTED: Brassica rapa PRA1 family protein G1 (LOC103871029), mRNA PRA1 family protein G1(LOC103871029) coding protein psRNATarget