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BaseInfo

ncRNA ID novel_bra_miR623
Species Brassica rapa
Class miRNA
Genome position ChrA5:9003697-9003773 [+]
Reference genome Brapa_1.0
Source SRR1776889
Length 24
Mature sequence(if miRNA) 54 - AAUGUGAUUGAUAUAGUUCGUGGU - 77
Stem-loop(if miRNA) --G           AG  AUU   -  ---      AUGA
   AUGAACUGUGU  GU   GUU CU   CCAGUU    A
   |||||||||||  ||   ||| ||   ||||||    U
   UGCUUGAUAUA  UA   UAA GA   GGUCAA    G
UGG           GU  GUG   U  UUG      AUCA
Stem-loop sequence GAUGAACUGUGUAGGUAUUGUUCUCCAGUUAUGAAUGACUAAACUGGGUUAGUAAUGUGAUUGAUAUAGUUCGUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009152015.2
ncRNA:24   UGGUGCUUGAUAUAGUUAGUGUAA   1
  |=|||||||||||||||||||||*
targets:7   AUCACGAACUAUAUCAAUCACAUG   30

1.0 PREDICTED: Brassica rapa arogenate dehydratase 4, chloroplastic (LOC103873609), mRNA arogenate dehydratase 4, chloroplastic(LOC103873609) coding protein psRNATarget