ncRNA ID | novel_bra_miR623 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:9003697-9003773 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776889 |
Length | 24 |
Mature sequence(if miRNA) | 54 - AAUGUGAUUGAUAUAGUUCGUGGU - 77 |
Stem-loop(if miRNA) |
--G           AG  AUU   -  ---      AUGA    AUGAACUGUGU  GU   GUU CU   CCAGUU    A    |||||||||||  ||   ||| ||   ||||||    U    UGCUUGAUAUA  UA   UAA GA   GGUCAA    G UGG           GU  GUG   U  UUG      AUCA |
Stem-loop sequence | GAUGAACUGUGUAGGUAUUGUUCUCCAGUUAUGAAUGACUAAACUGGGUUAGUAAUGUGAUUGAUAUAGUUCGUGGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009152015.2 |
|
1.0 | PREDICTED: Brassica rapa arogenate dehydratase 4, chloroplastic (LOC103873609), mRNA | arogenate dehydratase 4, chloroplastic(LOC103873609) | coding protein | psRNATarget |