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BaseInfo

ncRNA ID novel_bra_miR621
Species Brassica rapa
Class miRNA
Genome position ChrA4:9972038-9972103 [+]
Reference genome Brapa_1.0
Source SRR1776889
Length 23
Mature sequence(if miRNA) 44 - AAGUUGUAGUAGGCGGUUUGAUA - 66
Stem-loop(if miRNA) --    CU U     -         CCACU   A
  UCAA  C CUUAC ACAACUUUU     UGA C
  ||||  | ||||| |||||||||     |||
  AGUU  G GGAUG UGUUGAAGA     ACU A
AU    UG C     A         -AAGU   U
Stem-loop sequence UCAACUCUCUUACACAACUUUUCCACUUGAACAUUCAUGAAAGAAGUUGUAGUAGGCGGUUUGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009119819.2
ncRNA:23   AUAGUUUGGCGGAUGAUGUUGAA   1
  |=|-||||*||||||||||*|||
targets:244   UGU-AAACAGCCUACUACACCUU   265

2.5 PREDICTED: Brassica rapa thionin-like protein 1 (LOC103843113), mRNA thionin-like protein 1(LOC103843113) coding protein psRNATarget