ncRNA ID | novel_bra_miR621 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA4:9972038-9972103 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776889 |
Length | 23 |
Mature sequence(if miRNA) | 44 - AAGUUGUAGUAGGCGGUUUGAUA - 66 |
Stem-loop(if miRNA) |
--    CU U     -         CCACU   A   UCAA  C CUUAC ACAACUUUU     UGA C   ||||  | ||||| |||||||||     |||   AGUU  G GGAUG UGUUGAAGA     ACU A AU    UG C     A         -AAGU   U |
Stem-loop sequence | UCAACUCUCUUACACAACUUUUCCACUUGAACAUUCAUGAAAGAAGUUGUAGUAGGCGGUUUGAUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009119819.2 |
|
2.5 | PREDICTED: Brassica rapa thionin-like protein 1 (LOC103843113), mRNA | thionin-like protein 1(LOC103843113) | coding protein | psRNATarget |