ncRNA ID | novel_bra_miR613 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA10:836328-836516 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776889 |
Length | 24 |
Mature sequence(if miRNA) | 166 - AUCUUUGGGCUUAUUGGCGAAAUA - 189 |
Stem-loop(if miRNA) |
--    AU        UA     GCUU    GACGA    GAGAGUGGUUUCAGCGGUGGGUUAGUGUGAUUCAAUCGGUGGGUUUAGAAUUUUCA   UUUC  CAGUGGGU  GAGGA    AAUC     GAGA                                                        U   ||||  ||||||||  |||||    ||||     ||||                                                        U   AAAG  GUUAUUCG  UUUCU    UUAG     UGUU                                                        G AU    CG        GG     -AUU    ---AG    AGUCAACGAUUUUUUUUUUUUAGAGUGUUAGUGUUUGGUGUUUAGGGAUUAGGAGA |
Stem-loop sequence | UUUCAUCAGUGGGUUAGAGGAGCUUAAUCGACGAGAGAGAGAGUGGUUUCAGCGGUGGGUUAGUGUGAUUCAAUCGGUGGGUUUAGAAUUUUCAUUGAGAGGAUUAGGGAUUUGUGGUUUGUGAUUGUGAGAUUUUUUUUUUUUAGCAACUGAUUGUGAGAUUUUAUCUUUGGGCUUAUUGGCGAAAUA |