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BaseInfo

ncRNA ID novel_bra_miR595
Species Brassica rapa
Class miRNA
Genome position ChrA8:9143921-9144045 [-]
Reference genome Brapa_1.0
Source SRR1776880
Length 21
Mature sequence(if miRNA) 1 - UGACCGAGUAGACCGAUAGUC - 21
Stem-loop(if miRNA) --                                 C                A  UC  C  
  CUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUC UCACCGGACAGGCUAA CU  UG AGC
  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  || ||U
  GAUAGCCAGAUGAGCCAGUCGCGAUCGAAGAAG AGUGGCCUGUCUGAUU GA  AC UCU
CU                                 U                A  UC  C  
Stem-loop sequence CUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUCCUCACCGGACAGGCUAAACUUCUGCAGCUUCUCCACUAGAUUAGUCUGUCCGGUGAUGAAGAAGCUAGCGCUGACCGAGUAGACCGAUAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009104953.2
ncRNA:21   CUGAUAGCCAGAUGAGCCAGU   1
  *|||||**||||||||||||*
targets:2448   UACUAUGAGUCUACUCGGUCU   2468

3.0 PREDICTED: Brassica rapa auxin efflux carrier component 7 (LOC103829294), mRNA auxin efflux carrier component 7(LOC103829294) coding protein psRNATarget