Search result

BaseInfo

ncRNA ID novel_bra_miR580
Species Brassica rapa
Class miRNA
Genome position ChrA5:23911454-23911557 [-]
Reference genome Brapa_1.0
Source SRR1161445
Length 21
Mature sequence(if miRNA) 84 - ACCCGUCUCUUAAUUUUUAAC - 104
Stem-loop(if miRNA) --ACC              U         -     A   CA           
     CGUCUCUUAAUUUU AACUAAAAA GCUAA AAC  AUUUUUAAAUAU
     |||||||||||||| ||||||||| ||||| |||  |||||||||||C
     GCAGAGAAUUAAAA UUGAUUUUU CGAUU UUG  UAAGAAUUUAUU
CUUAA              U         U     C   AG           
Stem-loop sequence ACCCGUCUCUUAAUUUUUAACUAAAAAGCUAAAAACCAAUUUUUAAAUAUCUUAUUUAAGAAUGAGUUCUUAGCUUUUUUAGUUUAAAAUUAAGAGACGAAUUC