ncRNA ID | novel_bra_miR578 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA10:5117343-5117430 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776880 |
Length | 23 |
Mature sequence(if miRNA) | 66 - UCUGAACCCUUGGAUAAAUCAUA - 88 |
Stem-loop(if miRNA) |
--                         A      -GUUU   UU   UCUGAACCCUUGGAUAAAUCAUAAA UCUAGG     AAU  U   ||||||||||||||||||||||||| ||||||     |||  A   GGACUUGGGAACCUAUUUAGUAUUU AGAUUU     UUA  A UG                         G      AGUUU   UA |
Stem-loop sequence | UCUGAACCCUUGGAUAAAUCAUAAAAUCUAGGGUUUAAUUUUAAAUAUUUUUGAUUUAGAGUUUAUGAUUUAUCCAAGGGUUCAGGGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AB326958.1 |
|
3.0 | Brassica rapa SLG-53 gene for S-locus glycoprotein, partial cds | NA | coding protein | psRNATarget |