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BaseInfo

ncRNA ID novel_bra_miR573
Species Brassica rapa
Class miRNA
Genome position ChrA4:5967201-5967288 [-]
Reference genome Brapa_1.0
Source SRR1776880
Length 23
Mature sequence(if miRNA) 66 - UCUGAACCCUUGGAUAAAUCAUA - 88
Stem-loop(if miRNA) --                        A  G  AAUCAAAAAUAU
  UCUGAACCCUUGGAUAAAUCAUAA CU UA            U
  |||||||||||||||||||||||| || ||
  GGACUUGGGAACCUAUUUAGUAUU GA AU            U
UG                        A  G  CUCAAAUUAAAA
Stem-loop sequence UCUGAACCCUUGGAUAAAUCAUAAACUGUAAAUCAAAAAUAUUUAAAAUUAAACUCUAGAGAUUAUGAUUUAUCCAAGGGUUCAGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB326958.1
ncRNA:23   AUACUAA-AUAGGUUCCCAAGUCU   1
  |=|*|*|-||||||||||||||||
targets:919   UGUAACUGUAUCCAAGGGUUCAGA   942

3.0 Brassica rapa SLG-53 gene for S-locus glycoprotein, partial cds NA coding protein psRNATarget