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BaseInfo

ncRNA ID novel_bra_miR571
Species Brassica rapa
Class miRNA
Genome position ChrA8:2757049-2757104 [+]
Reference genome Brapa_1.0
Source SRR1125021
Length 24
Mature sequence(if miRNA) 1 - AACAAAAAAUAAAAGGAUUACUCC - 24
Stem-loop(if miRNA) --               G       CAU
  AACAAAAAAUAAAAG AUUACUC   U
  ||||||||||||||| |||||||
  UUGUUUUUUAUUUUC UAAUGAG   U
AC               G       AUA
Stem-loop sequence AACAAAAAAUAAAAGGAUUACUCCAUUUAUAGAGUAAUGCUUUUAUUUUUUGUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009146996.2
ncRNA:24   CCUCAUUAGGAAAAUAAAAAACAA   1
  |*=*||=*=|||||||||||||||
targets:1393   GUGUUAGCUCUUUUAUUUUUUGUU   1416

3.0 PREDICTED: Brassica rapa CBL-interacting serine/threonine-protein kinase 7 (LOC103868949), mRNA CBL-interacting serine/threonine-protein kinase 7(LOC103868949) coding protein psRNATarget